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	<title>Bleeding Edge Biotech &#187; Data Warehouse</title>
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		<title>Dynameomics: Mass annotation of protein dynamics</title>
		<link>http://www.bleedingedgebiotech.com/blog/bioengineering/dynameomics-mass-annotation-of-protein-dynamics/</link>
		<comments>http://www.bleedingedgebiotech.com/blog/bioengineering/dynameomics-mass-annotation-of-protein-dynamics/#comments</comments>
		<pubDate>Wed, 23 Apr 2008 14:34:38 +0000</pubDate>
		<dc:creator>Adam</dc:creator>
				<category><![CDATA[Bioengineering]]></category>
		<category><![CDATA[Data Warehouse]]></category>
		<category><![CDATA[Molecular Dynamics]]></category>

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		<description><![CDATA[Just in case you need another -omics in your biotech vocabulary. Dynameomics is an effort by the Dagget group at the University of Washington to characterize the native-state dynamics and folding/unfolding pathways of representatives of all known protein folds by way of molecular dynamics simulations Three successive articles have been published in Protein Engineering Design [...]]]></description>
			<content:encoded><![CDATA[<p><a href='http://www.bleedingedgebiotech.com/blog/wp-content/uploads/2008/04/picture-4.png'><img src="http://www.bleedingedgebiotech.com/blog/wp-content/uploads/2008/04/picture-4-300x182.png" alt="" title="dynamal" width="300" height="182" class="alignnone size-medium wp-image-78" /></a></p>
<p>Just in case you need another -omics in your biotech vocabulary.  Dynameomics is an effort by the <a href="http://depts.washington.edu/daglab/ilmm.html" title="Daggett Group | ilmm">Dagget group</a> at the University of Washington to<br />
<blockquote>characterize the native-state dynamics and folding/unfolding pathways of representatives of all known protein folds by way of molecular dynamics simulations</p></blockquote>
<p>Three successive articles have been published in Protein Engineering Design &#038; Selection to describe over 3000 long molecular dynamics simulations, the computational workflow, and data mining capabilities of Dynameomics.  Dynameomics has applets for visual analysis and even high-quality movies of their MD trajectories!</p>
<p>
Papers:</p>
<ul>
<li><a href="http://peds.oxfordjournals.org/cgi/content/abstract/gzn011v1">Dynameomics: mass annotation of protein dynamics and unfolding in water by high-throughput atomistic molecular dynamics simulations</a></li>
<li><a href="http://peds.oxfordjournals.org/cgi/content/abstract/gzn015v2">Dynameomics: a multi-dimensional analysis-optimized database for dynamic protein data</a></li>
<li><a href="http://peds.oxfordjournals.org/cgi/content/abstract/gzn012v1">Dynameomics: design of a computational lab workflow and scientific data repository for protein simulations</a></li>
</ul>
<p><a href="http://www.dynameomics.org/movies/4pga_498.mpg" class="broken_link">Video: 4PGA unfolding movie</a></p>
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